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<art>
   <ui>1742-2094-6-16</ui>
   <ji>1742-2094</ji>
   <fm>
      <dochead>Review</dochead>
      <bibl>
         <title>
            <p>Unique aspects of transcriptional regulation in neurons &#8211; nuances in NF&#954;B and Sp1-related factors</p>
         </title>
         <aug>
            <au id="A1" ca="yes">
               <snm>Mao</snm>
               <mi>R</mi>
               <fnm>Xianrong</fnm>
               <insr iid="I1"/>
               <email>maox@morpheus.wustl.edu</email>
            </au>
            <au id="A2">
               <snm>Moerman-Herzog</snm>
               <mi>M</mi>
               <fnm>Andr&#233;a</fnm>
               <insr iid="I2"/>
               <email>moermanandream@uams.edu</email>
            </au>
            <au id="A3">
               <snm>Chen</snm>
               <fnm>Yuzhi</fnm>
               <insr iid="I2"/>
               <insr iid="I3"/>
               <email>chenyuzhi@uams.edu</email>
            </au>
            <au id="A4">
               <snm>Barger</snm>
               <mi>W</mi>
               <fnm>Steven</fnm>
               <insr iid="I2"/>
               <insr iid="I3"/>
               <insr iid="I4"/>
               <email>bargerstevenw@uams.edu</email>
            </au>
         </aug>
         <insg>
            <ins id="I1">
               <p>Department of Anesthesiology, Washington University School of Medicine, St Louis MO 63110, USA</p>
            </ins>
            <ins id="I2">
               <p>Department of Geriatrics, University of Arkansas for Medical Sciences, Little Rock AR 72205, USA</p>
            </ins>
            <ins id="I3">
               <p>Department of Neurobiology and Developmental Sciences, University of Arkansas for Medical Sciences, Little Rock AR 72205, USA</p>
            </ins>
            <ins id="I4">
               <p>Geriatric Research Education and Clinical Center, Central Arkansas Veterans Healthcare System, Little Rock AR 72205, USA</p>
            </ins>
         </insg>
         <source>Journal of Neuroinflammation</source>
         <issn>1742-2094</issn>
         <pubdate>2009</pubdate>
         <volume>6</volume>
         <issue>1</issue>
         <fpage>16</fpage>
         <url>http://www.jneuroinflammation.com/content/6/1/16</url>
         <xrefbib>
            <pubidlist>
               <pubid idtype="pmpid">19450264</pubid>
               <pubid idtype="doi">10.1186/1742-2094-6-16</pubid>
            </pubidlist>
         </xrefbib>
      </bibl>
      <history>
         <rec>
            <date>
               <day>02</day>
               <month>4</month>
               <year>2009</year>
            </date>
         </rec>
         <acc>
            <date>
               <day>18</day>
               <month>5</month>
               <year>2009</year>
            </date>
         </acc>
         <pub>
            <date>
               <day>18</day>
               <month>5</month>
               <year>2009</year>
            </date>
         </pub>
      </history>
      <cpyrt>
         <year>2009</year>
         <collab>Mao et al; licensee BioMed Central Ltd.</collab>
         <note>This is an Open Access article distributed under the terms of the Creative Commons Attribution License (<url>http://creativecommons.org/licenses/by/2.0</url>), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</note>
      </cpyrt>
      <abs>
         <sec>
            <st>
               <p>Abstract</p>
            </st>
            <p>The unique physiology and function of neurons create differences in their cellular physiology, including their regulation of gene expression. We began several years ago exploring the relationships between the NF&#954;B transcription factor, neuronal survival, and glutamate receptor activation in telencephalic neurons. These studies led us to conclude that this population of cells is nearly incapable of activating the NF&#954;B that is nonetheless expressed at reasonable levels. A subset of the &#954;B cis elements are instead bound by members of the Sp1 family in neurons. Also surprising was our discovery that Sp1 itself, typically described as ubiquitous, is severely restricted in expression within forebrain neurons; Sp4 seems to be substituted during neuronal differentiation. These findings and their implications for neuronal differentiation &#8211; as well as potential dedifferentiation during degenerative processes &#8211; are discussed here.</p>
         </sec>
      </abs>
   </fm>
   <meta>
      <classifications>
         <classification type="bmc" subtype="user_supplied_xml" id="endnote"/>
      </classifications>
   </meta>
   <bdy>
      <sec>
         <st>
            <p>NF&#954;B induction pathways</p>
         </st>
         <p>NF&#954;B consists of two subunits of Rel-family proteins, which include RelA (p65), RelB, cRel, p50, and p52 in mammalian cells <abbrgrp><abbr bid="B1">1</abbr></abbrgrp>. RelA, RelB, and cRel subunits contain a transactivation domain; p50 and p52 do not. These subunits can form about a dozen different homo- and heterodimers. The best-characterized dimer is RelA/p50, also known as the canonical NF&#954;B. Rel family proteins have a nuclear localization sequence (NLS) that permits their translocation to the nucleus upon activation, where they bind specific DNA sequences. The consensus bound by canonical NF&#954;B is typically represented by GGGRNNYYCC; other dimers have slightly different preferences <abbrgrp><abbr bid="B2">2</abbr></abbrgrp>. NF&#954;B activation is transient in most scenarios and terminated through the interaction between NF&#954;B and the inhibitory &#954;B proteins (I&#954;Bs) and also through degradation by proteasomal activity in the nucleus <abbrgrp><abbr bid="B3">3</abbr></abbrgrp>. I&#954;Bs can mask the NLS of Rel proteins, and one of them (I&#954;B&#945;) has a nuclear export sequence (NES) through which the NF&#954;B/I&#954;B&#945; complex is efficiently shuttled back to cytosol, restoring the inactive state. NF&#954;B activation typically results from the breakdown of I&#954;B proteins, an event requiring multiple steps. Once a stimulus activates the pathway, I&#954;B kinases IKK1, IKK2, and IKK3 (the last is a scaffolding protein) are activated, phosphorylating I&#954;Bs <abbrgrp><abbr bid="B4">4</abbr></abbrgrp>. Phosphorylated I&#954;Bs are degraded through the ubiquitin/proteasome pathway. The degradation of I&#954;Bs liberates NF&#954;B and completes the activation cycle.</p>
         <p>Despite the similarities between Rel family members, specific components of the NF&#954;B system play unique and nonredundant roles <abbrgrp><abbr bid="B5">5</abbr><abbr bid="B6">6</abbr></abbrgrp>. One aspect of this specificity is the preference of various dimers for different DNA sequences <abbrgrp><abbr bid="B2">2</abbr></abbrgrp>. There is also specificity in the stimuli and mechanisms of activation. Tumor necrosis factor-&#945; (TNF&#945;) and other activators of canonical NF&#954;B signal through IKK2. Lymphotoxin-&#945; (a.k.a., "TNF&#946;") and CD40 ligand, on the other hand, induce the noncanonical pathway via IKK1. IKK2 and canonical NF&#954;B orchestrate inflammation and a few other immune responses; they also promote viability through the induction of several anti-apoptosis genes <abbrgrp><abbr bid="B7">7</abbr><abbr bid="B8">8</abbr><abbr bid="B9">9</abbr></abbrgrp>. IKK1 appears to be involved in feedback inhibition of inflammation and contributes critically to development, with particular importance for limb formation <abbrgrp><abbr bid="B10">10</abbr><abbr bid="B11">11</abbr></abbrgrp>. The noncanonical pathway utilizes p100 (the precursor of p52) to mask the NLS of RelB, excluding RelB/p100 from the nucleus without involvement of a canonical I&#954;B. Inactive RelB/p100 is converted to active RelB/p52 by IKK1 and NF&#954;B-inducing kinase (NIK). Activated NIK preferentially phosphorylates IKK1 rather than IKK2, and activated IKK1 subsequently phosphorylates p100, which is then partially degraded to p52 through a ubiquitin-dependent mechanism. The resulting RelB/p52 heterodimer constitutes active, noncanonical NF&#954;B.</p>
      </sec>
      <sec>
         <st>
            <p>NF&#954;B activation in neurons? The case of glutamate</p>
         </st>
         <p>Glutamate is the major excitatory neurotransmitter in the central nervous system (CNS), but it also exhibits toxicity to most types of neurons. This excitotoxicity has been implicated in many disease states <abbrgrp><abbr bid="B12">12</abbr></abbrgrp>, and NF&#954;B has complex roles in cellular viability and death <abbrgrp><abbr bid="B2">2</abbr></abbrgrp>. Therefore, elucidation of the potential interactions between glutamate and NF&#954;B is extremely important for understanding both normal and pathological brain functions.</p>
         <p>Although NF&#954;B activation is transient in all other systems, it was initially reported to be constitutively active in cortical neurons <abbrgrp><abbr bid="B13">13</abbr></abbrgrp>. Shortly thereafter, that laboratory and others reported that NF&#954;B activity was activated after glutamate treatment in cerebellar granule cell cultures <abbrgrp><abbr bid="B14">14</abbr><abbr bid="B15">15</abbr></abbrgrp>. But the neuronal population in cerebellar granule cell cultures cannot be enriched with mitotic inhibitors <abbrgrp><abbr bid="B16">16</abbr><abbr bid="B17">17</abbr></abbrgrp>; so these results, obtained from cultures maintained in the presence of serum, raise the question of whether the detected NF&#954;B activity was truly from neurons or from contaminating glia.</p>
         <p>Because of our interest in both glutamatergic stimuli and CNS transcriptional regulation, we made extensive attempts to reproduce the activation of NF&#954;B by glutamate. These efforts have routinely utilized a rat cerebral culture system [see Additional file <supplr sid="S1">1</supplr>] that is almost completely devoid of nonneuronal cell types. Using cell type-specific immunocytochemistry, we determined that mitotic inhibitors were not sufficient for producing glia-free cultures of neurons; nor could a serum-free medium alone achieve this goal. By using a mitotic inhibitor <it>together with </it>serum-free medium we found we could restrict glial contamination to less than one percent of cells. Mitotic inhibitors are rather stressful to the neurons themselves; and the most commonly used, cytosine arabinoside (AraC), has been reported to either stimulate <abbrgrp><abbr bid="B18">18</abbr></abbrgrp> or inhibit <abbrgrp><abbr bid="B19">19</abbr></abbrgrp> NF&#954;B itself. Therefore, we employed a transient AraC treatment, including it only in the first four days in culture.</p>
         <suppl id="S1">
            <title>
               <p>Additional file 1</p>
            </title>
            <text>
               <p><b>Supplemental methods</b>. The file contains detailed methodology for the experiments presented in this review.</p>
            </text>
            <file name="1742-2094-6-16-S1.doc">
               <p>Click here for file</p>
            </file>
         </suppl>
         <p>Many of the original reports of NF&#954;B activation in neurons were based on nuclear translocation of the transcription factor as an endpoint. We tested this parameter in our highly enriched cortical neuron cultures. Cells treated with glutamate and then lysed and separated into a cytosolic fraction (supernatant) and a nuclear fraction (whole nuclear pellet sonicated) for analysis by western blotting (note: this is different from the nuclear extract used in EMSA, which only includes the salt-extractable components). Glutamate was indeed found to evoke nuclear translocation of RelA under these conditions (Figure <figr fid="F1">1</figr>). This is consistent with previous findings we obtained with immunocytochemistry <abbrgrp><abbr bid="B20">20</abbr></abbrgrp>. Translocation of RelA-containing NF&#954;B complexes is typically dependent upon degradation of an I&#954;B, so we assessed the levels of I&#954;B&#945; in whole-cell lysates obtained after an identical glutamate treatment. No significant levels of other I&#954;B proteins can be detected in cultured cortical neurons, although multiple antibodies have been tested for each. Interestingly, only a small reduction of I&#954;B&#945; levels could be observed in neurons (Figure <figr fid="F1">1</figr>). This is particularly apparent when compared to the nearly complete loss of I&#954;B&#945; we observed in astrocytes treated with TNF&#945; (Figure <figr fid="F1">1</figr>).</p>
         <fig id="F1">
            <title>
               <p>Figure 1</p>
            </title>
            <caption>
               <p>RelA nuclear translocation in neurons after glutamate treatment</p>
            </caption>
            <text>
               <p><b>RelA nuclear translocation in neurons after glutamate treatment</b>. Nearly pure neocortical neurons were treated with glutamate (50 &#956;M) for the indicated times and cells were harvested for fractionation (<b>Cyto</b>.: cytosolic fraction; <b>Nuc</b>.: nuclear fraction); these were probed by western blot for RelA. Whole-cell lysates were also prepared from either astrocyte or neuron cultures; these were probed by western blot for I&#954;B&#945; (<b>Whole</b>: neuron whole cell lysate). TNF&#945; was applied to the astrocytes at 100 ng/ml for the indicated times (min).</p>
            </text>
            <graphic file="1742-2094-6-16-1"/>
         </fig>
         <p>Nuclear translocation is necessary but not sufficient for NF&#954;B activation of transcription. Numerous circumstances have been documented in which NF&#954;B moves to the nucleus without effecting transactivation <abbrgrp><abbr bid="B21">21</abbr><abbr bid="B22">22</abbr><abbr bid="B23">23</abbr><abbr bid="B24">24</abbr><abbr bid="B25">25</abbr><abbr bid="B26">26</abbr><abbr bid="B27">27</abbr><abbr bid="B28">28</abbr><abbr bid="B29">29</abbr></abbrgrp>. We began to assay pure neuronal cultures by EMSA and found that NF&#954;B activity was undetectable by this measure after glutamate treatment <abbrgrp><abbr bid="B30">30</abbr></abbrgrp>. Many attempts have been made subsequently, and we have broadened our tests of NF&#954;B activity to include transcriptional activation, as well. No NF&#954;B activity has been detected in glutamate-treated neurons examined by EMSA, reporter-gene transfection, or a stably integrated reporter transgene <abbrgrp><abbr bid="B2">2</abbr><abbr bid="B20">20</abbr><abbr bid="B30">30</abbr><abbr bid="B31">31</abbr><abbr bid="B32">32</abbr></abbrgrp>.</p>
         <p>One possible explanation for discrepancies between our findings and those of others is the composition of our cell cultures. We tested the potential contributions of glia by comparing our essentially glia-free neuronal cultures to neuron-glia cocultures generated by the inclusion of serum. These experiments consistently showed NF&#954;B activation the cocultures <abbrgrp><abbr bid="B2">2</abbr><abbr bid="B20">20</abbr><abbr bid="B30">30</abbr><abbr bid="B31">31</abbr></abbrgrp>. To determine the cell type contributing this NF&#954;B activity, we made use of a transwell coculture model that permitted us to physically separate neurons from glia after glutamate treatment <abbrgrp><abbr bid="B31">31</abbr></abbrgrp>. In this format, we found that NF&#954;B activity could not be induced by glutamate in pure cultures of <it>either </it>neurons or glia alone. However, transwell cultures in which glia and neurons were together for two days showed NF&#954;B induction in the glia but not in the neurons. One hypothesis to explain these results is that glutamate-stimulated neurons release a soluble factor that induces NF&#954;B in glia. Alternatively, neurons may chronically release a factor that alters the acute responses of glial NF&#954;B to glutamate. This latter idea is consistent with our data: glutamate was incapable of inducing NF&#954;B in glia if they were placed with neurons only immediately before glutamate stimulation. This result also demonstrates that glia can be the source of NF&#954;B in cocultures even though pure astrocyte cultures do not show a response to glutamate themselves; e.g., Guerrini <it>et al</it>. (1995) <abbrgrp><abbr bid="B15">15</abbr></abbrgrp>.</p>
         <p>The above studies with glutamate and other stimuli were largely conducted in cell culture. While this approach has limitations, its contributions to our understanding of neuronal transcription are important because it is technically impossible to precisely determine both the location and activity level of a transcription factor <it>in vivo</it>. The best strategy for doing so involves making an animal transgenic for a &#946;-galactosidase reporter gene driven by a promoter responsive to the transcription factor of interest. Although &#946;-gal histochemistry is not exquisitely quantitative, it nonetheless reports whether there has been some level of transcription. Two such transgenic models suggest that NF&#954;B is constitutively active in neurons <abbrgrp><abbr bid="B33">33</abbr><abbr bid="B34">34</abbr></abbrgrp>. Bhakar <it>et al</it>. <abbrgrp><abbr bid="B33">33</abbr></abbrgrp> reported that constitutive NF&#954;B activity could be detected by the &#954;B/&#946;-gal reporter transgene, and this activity was required for survival of neurons. However, electrophoretic mobility shift assays (EMSA) conducted by the authors failed to demonstrate DNA-binding activity for NF&#954;B (personal communication), which raises the possibility that the basal activity of this &#954;B/&#946;-gal reporter is driven by other &#954;B-binding factor(s), such as Sp-factors (below). In addition, the transgene integration site in the genome might be critical for this reporter activity, and those circumstances remain undetermined. Nevertheless, no NF&#954;B activity could be evoked by glutamate in these transgenic neurons <abbrgrp><abbr bid="B2">2</abbr></abbrgrp>. In the transgenic system developed by Fridmacher <it>et al</it>. <abbrgrp><abbr bid="B34">34</abbr></abbrgrp>, the reporter gene was driven by the p105 (p50 precursor) promoter. This promoter was selected for its NF&#954;B-responsiveness, but Sp1-related factors are also involved in regulation of this promoter via &#954;B and non-&#954;B elements <abbrgrp><abbr bid="B35">35</abbr></abbrgrp>. Furthermore, in the initial report creating this p105-promoter/&#946;-gal line, a complex distinct from NF&#954;B was shown to prominently bind this promoter in EMSA <abbrgrp><abbr bid="B36">36</abbr></abbrgrp>. It is now clear that this constitutive &#954;B-binding activity results from Sp1-related factors <abbrgrp><abbr bid="B32">32</abbr></abbrgrp>. Induction of an I&#954;B&#945; super-repressor inhibited expression of the p105-promoter/&#946;-gal reporter, but I&#954;B&#945; also inhibits activity of Sp1-related factors <abbrgrp><abbr bid="B37">37</abbr></abbrgrp>, a phenomenon that will become further relevant in discussions below. Fridmacher <it>et al</it>. found that induction of the I&#954;B&#945; super-repressor had no effect on neuronal survival under basal conditions, contradicting the results from the transgenic model reported by Bhakar <it>et al</it>. Fridmacher <it>et al</it>. did not identify NF&#954;B in neurons by EMSA or other immunological methods.</p>
         <p>We have further analyzed <it>in vitro </it>neurons from the transgenic line developed by Bhakar <it>et al</it>. <abbrgrp><abbr bid="B33">33</abbr></abbrgrp>. The main objective was to explore the possibility that pure neuronal cultures are altered in their handling of NF&#954;B due to the absence of a physical interaction with glia. To test this idea, we cultured neurons from the &#954;B/&#946;-gal reporter line with wild-type glia so that typical neuron-glia interactions could take place, while the reporting of NF&#954;B activity would be specific to the neurons in the coculture. Wild-type astrocytes were first plated and grown to confluency, and then E17 transgenic (&#954;B/&#946;-gal) cortical cells were added one week prior to treatment. The pre-plated wild-type astrocytes suppressed growth of transgenic glia but promoted survival of the &#954;B/&#946;-gal neurons, as histochemistry showed no astrocytes positive for &#946;-gal. These cocultures were compared to cultures of &#954;B/&#946;-gal neurons alone. Two treatment paradigms were tested: 1) a transient exposure to glutamate (10 min) followed by a 6- to 24-hour chase period, or 2) continuous exposure to glutamate for 6 to 24 hours (Figure <figr fid="F2">2</figr>). Once again, neuronally localized NF&#954;B activity could not be induced by glutamate. Indeed, basal &#946;-gal levels were suppressed by glutamate exposure, an effect that was partially suppressed in the presence of glia, presumably due to the ability of astrocytes to metabolize glutamate. This negative effect of glutamate on &#954;B-dependent transcription is consistent with copious EMSA data showing that glutamate reduces the levels of &#954;B-binding Sp1-related factors in neurons (below).</p>
         <fig id="F2">
            <title>
               <p>Figure 2</p>
            </title>
            <caption>
               <p>Glutamate is unable to activate neuronal NF&#954;B in mixed cell cultures</p>
            </caption>
            <text>
               <p><b>Glutamate is unable to activate neuronal NF&#954;B in mixed cell cultures</b>. Neocortical neurons from &#954;B/&#946;-gal transgenic mice were either plated on the top of wild-type astrocytes ("+glia") or retained as nearly pure neuronal cultures ("-glia"). <b>A</b>. Glutamate was applied at 50 &#956;M for 10 min, then chased for the times indicated (h). <b>B</b>. Glutamate was applied at 20 &#956;M continuously for the times indicated (h). &#946;-gal activity was determined by a luminescent assay. Values represent activity relative to untreated cultures &#177; SEM in quadruplicate cultures. ANOVA followed by Scheffe post-hoc test showed significance between control and each treatment, and between the "+glia" and "-glia" in all comparisons except the 6 h timepoint in A. (<it>p </it>&lt; 0.02).</p>
            </text>
            <graphic file="1742-2094-6-16-2"/>
         </fig>
         <p>Others have confirmed a similar degree of recalcitrance of NF&#954;B in CNS neurons <abbrgrp><abbr bid="B38">38</abbr><abbr bid="B39">39</abbr></abbrgrp>. But contradictory findings have been reported, as well. Most notably, Kaltschmidt and Kaltschmidt <abbrgrp><abbr bid="B40">40</abbr></abbrgrp> provided immunocytochemical data indicating that a five-minute exposure to kainate triggered an increase in "active" RelA immunogenicity (some of which was nuclear) in neurons an hour later. This apparent activation did not occur if a coverslip plated with astrocytes was placed over the neurons after the stimulus. Astrocytes exhibit high rates of glutamate uptake and amination; thus, they would be expected to attenuate events dependent upon glutamate receptors if the agonist was glutamate itself. Indeed, we found that astrocytes inhibited the glutamate-evoked diminution of transactivation in &#954;B/&#946;-gal neurons (Figure <figr fid="F2">2</figr>). However, kainate is not a substrate for glutamate transporters, and no coverslip-borne astrocytes were present when Kaltschmidt and Kaltschmidt applied kainate to their neurons. Their results thus indicate some influence of astrocytes on neuronal RelA after glutamate receptor activation had ceased. This does not appear to be the result of a soluble factor, as the control neurons received astrocyte-conditioned medium. Nor does it appear to depend on cell-cell contact, as the astrocytes on the coverslip were physically separated from the neurons. Notably, the "neuronal" cultures (lacking the astrocyte coverslip) in these experiments were plated in the presence of 10% serum and thus contained approximately 10% glia <abbrgrp><abbr bid="B40">40</abbr></abbrgrp>. It is somewhat surprising that this more intimate association of glia with the neurons was insignificant compared to that provided by the coverslip's astrocytes. In the end, the results of this study remain unexplained, irrespective of their relationship to our results with cocultures. Moreover, Kaltschmidt and Kaltschmidt failed to demonstrate DNA binding or transcriptional activation by NF&#954;B in their cocultures.</p>
         <p>Although our original focus was to test the reported induction of NF&#954;B by glutamatergic agonism, we have also examined other stimuli. To date, we have failed to detect appreciable NF&#954;B activity in neurons treated with TNF&#945;, nerve growth factor, brain-derived neurotrophic factor, cholinergic or adrenergic agonists, cytoskeletal drugs, or oxidants (e.g., hydrogen peroxide). Many of these stimuli generated detectable NF&#954;B activity when as few as 5% of the cells in the culture were glia.</p>
         <p>Together, these data and their caveats provide the conclusion that no convincing evidence supports the full activation of NF&#954;B in neurons, although the initial stages up through nuclear translocation have been detected by ourselves and others (Figure <figr fid="F1">1</figr>; see also Ref. <abbrgrp><abbr bid="B20">20</abbr></abbrgrp>). Most of our work has been conducted with cultured cortical neurons equivalent to post-natal days 2&#8211;5, and it is possible that they fundamentally differ from cortical neurons <it>in situ </it>in the adult. However, such cultured neurons are post-mitotic by virtue of our transient AraC treatment, and they exhibit mature responses to glutamate <abbrgrp><abbr bid="B41">41</abbr></abbrgrp>. Thus, they can be said to differ more from the nonneuronal cells that do exhibit NF&#954;B activity than from the mature neurons of adult brain. It is also meaningful that the NF&#954;B function does not appear to be required for normal development or function of the CNS. These parameters are normal in the various mouse lines with genetic ablation of key components of the NF&#954;B pathway, most of which appear to have unique, nonredundant roles <abbrgrp><abbr bid="B42">42</abbr></abbrgrp>. These data strongly suggest that either NF&#954;B is passively defective in neurons or there exist special circumstances actively blocking glutamate-triggered NF&#954;B activity. Either case would be consistent with the notion that the CNS, as a partially immunoprivileged site, requires the silencing of NF&#954;B in neurons. In all, these issues stimulate interest in potential mechanisms that might be responsible for unique regulation of NF&#954;B in neurons.</p>
      </sec>
      <sec>
         <st>
            <p>Dissecting the neuronal NF&#954;B pathway</p>
         </st>
         <sec>
            <st>
               <p>Cloning of RelA and I&#954;Bs from neurons</p>
            </st>
            <p>To test if the NF&#954;B pathway is intact in neurons, it would be reasonable to start with RelA. Several RelA splicing variants have been reported <abbrgrp><abbr bid="B43">43</abbr><abbr bid="B44">44</abbr><abbr bid="B45">45</abbr><abbr bid="B46">46</abbr><abbr bid="B47">47</abbr></abbrgrp>. One of them (p65<sup>&#916;</sup>) is particularly interesting because this RelA splicing variant lacks nine residues critical for DNA-binding <abbrgrp><abbr bid="B44">44</abbr></abbrgrp>. This alternative splicing naturally occurs in human and mouse <abbrgrp><abbr bid="B45">45</abbr></abbrgrp>. If this were the sole splice variant expressed in neurons, this could explain the observed deficiency of NF&#954;B activity in neurons. However, the alternative splice-acceptor site present in human and mouse does not exist in the rat genome. Therefore, a p65<sup>&#916; </sup>would be extremely unlikely in rat neurons. Moreover, we cloned RelA cDNA from cortical neurons (accession # AY307375) and found that all the serine residues potentially critical for RelA function are present. Furthermore, when it was transfected in neurons, rat neuronal RelA showed high activity (see below). These data indicate that there is no inherent defect in rat neuronal RelA. These data also indicate that RelA overexpressed from a transgene can behave differently from its endogenous counterpart, presumably because the transfected RelA is expressed at levels high enough to overwhelm some intrinsic inhibitory process. In addition, these data suggest that caution should be used in interpreting data obtained from NF&#954;B transfection studies (e.g., Ref. <abbrgrp><abbr bid="B48">48</abbr></abbrgrp>).</p>
            <p>Glutamate treatment triggers a relatively small reduction of I&#954;B&#945; proteins, suggesting that the unresponsiveness of neuronal NF&#954;B might result from a defect in I&#954;B degradation. I&#954;B&#945; degradation is triggered by phosphorylation of two serine residues, an event which signals degradation through a ubiquitin-dependent pathway involving &#946;-TrCP <abbrgrp><abbr bid="B49">49</abbr></abbrgrp>. Either an alteration of those critical serines or a deficiency in &#946;-TrCP-dependent ubiquitin could result in insufficient I&#954;B degradation and low NF&#954;B activity. We cloned I&#954;B&#945; and I&#954;B&#946; genes from rat neurons, and their sequences showed no mutations compared to those published (data not shown). In addition, expression of a &#946;-TrCP transgene did not permit induction of a &#954;B-driven luciferase reporter-gene construct (below). Therefore, both RelA and major I&#954;B genes appear normal in neurons. We extended our scope to other players in the pathway in a quest for potential differences between CNS neurons and other cell types.</p>
         </sec>
         <sec>
            <st>
               <p>Profiling components of the NF&#954;B pathway in neurons</p>
            </st>
            <p>RT-PCR was used to probe the mRNA expression levels of the major components of NF&#954;B pathway. After optimizing PCR conditions, unequivocal products for each of these genes were obtained from glia. Then, identical conditions were used to compare glia and neuron samples. In each case, more than one pair of primers was used, and consistent results were observed for the same gene [see Additional file <supplr sid="S2">2</supplr>]. The results from one set of primers for each gene are shown (Figure <figr fid="F3">3</figr>). The genes tested included RelA, I&#954;B&#945;, I&#954;B&#946;, IKK1, IKK2, IKK3/NEMO, and NIK. Controls included three house-keeping genes: &#946;-actin, glyceraldehyde-3-phosphate dehydrogenase (GAPDH), cyclophilin. For reasons explained below, we also examined the Sp-factors Sp1, Sp3, and Sp4. Generally, the mRNA level of every component in the NF&#954;B pathway was expressed significantly lower in neurons than in astrocytes (<it>p </it>&lt; 0.05 for each gene, astrocytes vs. neurons). &#946;-actin was also expressed at a lower level in neurons (<it>p </it>&lt; 0.05). However, GAPDH, cyclophilin, and Sp3 mRNA levels were almost equivalent in neurons and astrocytes; Sp4 mRNA levels were significantly higher in neurons than in astrocytes (<it>p </it>&lt; 0.05) (see also Ref. <abbrgrp><abbr bid="B50">50</abbr></abbrgrp> for Sp-factor expression). Therefore, these PCR results appear to reflect a significantly lower expression in neurons than in glia for every component of the NF&#954;B pathway.</p>
            <suppl id="S2">
               <title>
                  <p>Additional file 2</p>
               </title>
               <text>
                  <p><b>Table S1</b>. This table provides details about PCR primers and conditions and is cited in Additional File <supplr sid="S1">1</supplr>.</p>
               </text>
               <file name="1742-2094-6-16-S2.pdf">
                  <p>Click here for file</p>
               </file>
            </suppl>
            <fig id="F3">
               <title>
                  <p>Figure 3</p>
               </title>
               <caption>
                  <p>Differential levels of mRNA for key components of the NF&#954;B pathway in neurons versus glia</p>
               </caption>
               <text>
                  <p><b>Differential levels of mRNA for key components of the NF&#954;B pathway in neurons versus glia</b>. RNA was harvested from rat primary neocortical neurons and astrocytes. Semiquantitive RT-PCR was performed on equal amounts of total mRNA to survey expression of genes in the NF&#954;B pathway, housekeeping genes, and Sp-family factors [see Additional file <supplr sid="S1">1</supplr>]. Each lane represents one of four individual cultures.</p>
               </text>
               <graphic file="1742-2094-6-16-3"/>
            </fig>
         </sec>
         <sec>
            <st>
               <p>Reporter assays for complementing the NF&#954;B pathway in neurons</p>
            </st>
            <p>Another intriguing fact is that Sp1 protein is nearly absent in neurons, although Sp1 mRNA can be detected <abbrgrp><abbr bid="B51">51</abbr></abbrgrp>. Similarly, the deficiency of NF&#954;B mRNAs in neurons may actually under-represent a more profound deficiency in protein levels. This issue was addressed through a reconstitution approach using expression of a &#954;B-driven luciferase reporter-gene as the endpoint. It should be noted that the &#954;B element in our luciferase reporter excludes nucleotides that allow binding by Sp-factors and RBP-J&#954; (below), thus rendering it specific for NF&#954;B. Several components of the NF&#954;B pathway, including &#946;-TrCP, were overexpressed by transfection [see Additional file <supplr sid="S1">1</supplr>] to test whether their expression would be permissive for the induction of endogenous NF&#954;B activity in neurons. Overexpression of a TNF receptor association factor (TRAF) is sufficient to activate NF&#954;B in many cell types <abbrgrp><abbr bid="B52">52</abbr></abbrgrp>. However, neither TRAF2 (Figure <figr fid="F4">4</figr>) nor TRAF6 (not shown) could activate NF&#954;B in neurons, as measured by a cotransfected &#954;B-driven luciferase reporter. Indeed, none of the constituents of the NF&#954;B pathway was effective. Several components were cotransfected in combination with one another (Figure <figr fid="F4">4</figr>). Even so, NF&#954;B activation was never detected in any of these conditions except for one: the overexpression of RelA. A low dose of RelA expression plasmid was used to replace TRAF2 to repeat the experiment. This modest level of exogenously supplied activity could not be boosted further by cotransfection of any of combination of IKKs (Figure <figr fid="F5">5</figr>). These findings suggest that there are no passive functional deficiencies of major components of the NF&#954;B pathway in neurons.</p>
            <fig id="F4">
               <title>
                  <p>Figure 4</p>
               </title>
               <caption>
                  <p>NF&#954;B activity in neurons cannot be evoked by supplementing key components of its pathway</p>
               </caption>
               <text>
                  <p><b>NF&#954;B activity in neurons cannot be evoked by supplementing key components of its pathway</b>. IKK1, IKK2, IKK3, NIK, &#946;-TrCP1, and TRAF2 were transfected either alone or in combination as indicated to test NF&#954;B activity in neocortical neurons by reporter assays with a &#954;B-driven firefly luciferase construct. Some transfection conditions were also further treated with rat TNF&#945; (1&#8211;100 ng/ml). Rat RelA transfection served as a positive control. After 24 h, firefly luciferase activities were determined relative to <it>Renilla </it>luciferase reference. Values reflect the mean &#177; SEM of triplicate cultures. Except RelA transfection, no condition created a significant change compared to control.</p>
               </text>
               <graphic file="1742-2094-6-16-4"/>
            </fig>
            <fig id="F5">
               <title>
                  <p>Figure 5</p>
               </title>
               <caption>
                  <p>Upstream components of NF&#954;B pathway cannot boost exogenous RelA activity in neurons</p>
               </caption>
               <text>
                  <p><b>Upstream components of NF&#954;B pathway cannot boost exogenous RelA activity in neurons</b>. Primary neocortical neurons were transfected with a &#954;B-driven firefly luciferase reporter, along with RelA and other key factors in the NF&#954;B pathway. (The dose of RelA plasmid was selected to be intermediate with respect to the maximal level of the assay's dynamic range.) In some conditions, cells were treated with rat TNF&#945; (10 ng/ml) after transfection. Relative luciferase activity from RelA (100 ng) transfection was 111.05 &#177; 8.9 (mean &#177; SEM) (not shown). All plasmids were 100 ng/well, except those labeled otherwise. After 24 h, firefly luciferase activities were determined relative to <it>Renilla </it>luciferase reference. Values reflect the mean &#177; SEM of triplicate cultures. *<it>p </it>&lt; 0.05 (t-test; other significant differences are not labeled).</p>
               </text>
               <graphic file="1742-2094-6-16-5"/>
            </fig>
         </sec>
      </sec>
      <sec>
         <st>
            <p>Searching for mechanisms of NF&#954;B repression</p>
         </st>
         <p>All of the requisite components of the NF&#954;B system appear to be expressed in forebrain neurons (Figure <figr fid="F3">3</figr> and data not shown). In addition, providing additional components by transfection did not create a responsive system in neurons. These findings are consistent with there being an active repression of NF&#954;B in forebrain neurons. To test candidate mechanisms for this repression, we used the following approaches:</p>
         <p indent="1">1) Transcription coordinator p300 is important for NF&#954;B transactivity, and p300 might be competed out by some other factors such as estrogen receptor <abbrgrp><abbr bid="B53">53</abbr></abbrgrp> in neurons. However, overexpression of p300 in neurons with or without glutamate treatment did not increase &#954;B-driven reporter activity.</p>
         <p indent="1">2) Acetylation has been reported to be important for RelA function <abbrgrp><abbr bid="B54">54</abbr></abbrgrp>. A triple mutation of RelA (K<sub>218/221/310</sub>&#8594;R) completely incapable of being acetylated was transfected into neurons. This RelA mutant possessed activity as high as the wild-type RelA transgene, suggesting that acetylation is not essential for RelA activity in neurons.</p>
         <p indent="1">3) Phosphorylation has been reported to be crucial for RelA function in some scenarios. Many serine residues have been identified as important: Ser<sub>529 </sub><abbrgrp><abbr bid="B25">25</abbr></abbrgrp>, Ser<sub>536 </sub><abbrgrp><abbr bid="B55">55</abbr></abbrgrp>, Ser<sub>337 </sub><abbrgrp><abbr bid="B56">56</abbr></abbrgrp>, Ser<sub>205</sub>/Ser<sub>278</sub>/Ser<sub>281 </sub><abbrgrp><abbr bid="B57">57</abbr></abbrgrp>, and Ser<sub>311 </sub><abbrgrp><abbr bid="B58">58</abbr></abbrgrp>. RelA cloned from rat cortical neurons did not show mutations at any of the relevant serines (see below). Moreover, these phosphorylation events affect RelA's transactivation activity rather than its DNA-binding activity, and neuronal NF&#954;B seems to be deficient in DNA-binding activity. Finally, we tested a S<sub>281</sub>&#8594;G RelA mutant in reporter assays, and this mutant functioned as well as the wild-type RelA transgene. Therefore, it seems highly unlikely that phosphorylation of RelA is a critical determinant of NF&#954;B activity in neurons.</p>
         <p indent="1">4) Transcription factor p53 has been reported to suppress NF&#954;B activity <abbrgrp><abbr bid="B59">59</abbr></abbrgrp>. However, we found that p53 inhibitor pifithrin-&#945; had no effect on NF&#954;B reporter-gene activity in neurons.</p>
         <p indent="1">5) Another Rel-factor RelB has been shown to inhibit RelA activity by disrupting its DNA binding <abbrgrp><abbr bid="B60">60</abbr></abbrgrp>. However, when RelB was transfected into neurons, it did not alter the activity of co-transfected RelA. Moreover, RelB expression levels are very low in neurons as determined by several antibodies in western blot analyses.</p>
         <p indent="1">6) The progesterone receptor can be induced to bind directly to NF&#954;B and inhibit its activity, and progesterone is a component of the medium we routinely use for neuronal cultures: Neurobasal with B27 supplement. To control for progesterone and any unknown components of Neurobasal/B27, we tested for NF&#954;B in neurons cultured in minimal essential medium containing N2 supplements with or without progesterone <abbrgrp><abbr bid="B20">20</abbr></abbrgrp>. Again, reporter-gene assays and EMSAs showed no basal nor induced NF&#954;B activity in neurons.</p>
      </sec>
      <sec>
         <st>
            <p>Binding of &#954;B enhancers by Sp1-related factors</p>
         </st>
         <p>Specific protein-1 (Sp1) is the prototypical member of a group of highly homologous zinc-finger transcription factors that includes Sp1 through -9 and the Kr&#252;ppel-like factors (of which there are as many as 17 in humans) <abbrgrp><abbr bid="B61">61</abbr><abbr bid="B62">62</abbr></abbrgrp>. Despite similarities in the zinc-finger domains among the family, only Sp3 and Sp4 share the DNA binding sequence first identified with Sp1. Like most NF&#954;B target sequences, the sites bound by these three Sp-factors are GC-rich. We and others have reported specific, robust, and functional binding of Sp1, -3, and -4 to a subset of NF&#954;B target sequences <abbrgrp><abbr bid="B32">32</abbr><abbr bid="B63">63</abbr></abbrgrp>. Indeed, binding by the latter two accounts for more than 95% of the binding to certain &#954;B elements in neurons.</p>
         <p>In our initial examination of Sp-factors in neurons, we assumed that reports of Sp1 ubiquity in the CNS were accurate. This prejudice, combined with antibodies that were at least partially cross-reactive with multiple Sp-family members, led us to conclude that it was indeed Sp1 that was responsible for &#954;B binding in EMSA with neuronal extracts. Subsequently, we found that the presence of Sp4 in mature neurons corresponds to a near absence of Sp1 <abbrgrp><abbr bid="B51">51</abbr></abbrgrp>. Immunofluorescence data obtained in our cultures, as well as in the cortex of adult rats, reveals negligible colocalization of Sp1 with neuronal markers and clear colocalization of Sp1 with the astrocyte marker glial fibrillary acidic protein (GFAP); the converse is true for Sp4. We also assessed the expression of these proteins in cell cultures highly enriched for neurons or glia, as well as in glial and neuronal cell lines. Both western blot analysis and RT-PCR analysis of mRNA indicate that Sp1 expression is much higher in glia than in neurons, and Sp4 shows the converse. Finally, we performed supershift analyses in EMSA; Sp1 antibodies altered the mobility of the Sp-factors only in glial cultures and Sp4 antibodies did so only in neuronal cultures. By all these methods Sp3 was found to be expressed at similar levels in both neuronal and nonneuronal cells.</p>
         <p>The replacement of Sp1 by Sp4 appears to have important ramifications for gene expression. Sp1 is primarily a transcriptional inducer, but Sp4 has often been connected to transcriptional repression, particularly when expressed in the presence of Sp3 <abbrgrp><abbr bid="B64">64</abbr><abbr bid="B65">65</abbr></abbrgrp>. Although others have shown that Sp1 overexpression in neurons can have powerful biological effects, our data would argue that the natural situation is replacement of this transcriptional inducer by the repressor-competent Sp4. While Sp4 can act as a transcriptional activator <abbrgrp><abbr bid="B66">66</abbr></abbrgrp>, it appears incapable of doing so in the presence of Sp3 <abbrgrp><abbr bid="B32">32</abbr><abbr bid="B64">64</abbr></abbrgrp>, which is abundant in cortical neurons <abbrgrp><abbr bid="B51">51</abbr></abbrgrp>. Alternatively, Sp4 may be primarily a stimulatory factor at "Sp1" binding sites and inhibitory at &#954;B elements. Further studies are required to explore these interesting possibilities.</p>
         <p>Sp1 and Sp4 dynamics may have important effects on the terminal differentiation of post-mitotic neurons. Indeed, Sp1 plays key roles in mitosis <abbrgrp><abbr bid="B67">67</abbr></abbrgrp>. It is responsible for inducing expression of key cell-cycle regulatory genes such as cdc25C <abbrgrp><abbr bid="B68">68</abbr></abbrgrp>, cyclin B1 <abbrgrp><abbr bid="B69">69</abbr></abbrgrp>, cyclin D1 <abbrgrp><abbr bid="B70">70</abbr></abbrgrp>, cyclin E1 <abbrgrp><abbr bid="B71">71</abbr></abbrgrp>, and thymidine kinase <abbrgrp><abbr bid="B72">72</abbr></abbrgrp>; these genes may be much less responsive to Sp4, a trait already demonstrated for thymidine kinase <abbrgrp><abbr bid="B72">72</abbr></abbrgrp>. Sp1 is phosphorylated by cyclin-dependent kinase 2 (Cdk2) at Ser<sub>59 </sub>during the S-phase of the cell cycle, and this results in transactivation of dihydrofolate reductase (DHFR) <abbrgrp><abbr bid="B73">73</abbr></abbrgrp>, an essential event in the production of thymidine for DNA synthesis. Sp1 is also associated physically with cyclin A and cyclin E1 during S-phase <abbrgrp><abbr bid="B74">74</abbr></abbrgrp>. Reductions in the level or activity of Sp1 can block mitosis <abbrgrp><abbr bid="B75">75</abbr><abbr bid="B76">76</abbr></abbrgrp>. We have noted a dramatic suppression of Sp1 expression after differentiation of NTera2 cells into neurons (Figure <figr fid="F6">6A</figr>).</p>
         <fig id="F6">
            <title>
               <p>Figure 6</p>
            </title>
            <caption>
               <p>ApoE declines with Sp1 during neuronal differentiation but is induced by glutamate</p>
            </caption>
            <text>
               <p><b>ApoE declines with Sp1 during neuronal differentiation but is induced by glutamate</b>. <b>A</b>. NTera2 cells were harvested undifferentiated (U) or after incubation as neurospheres in retinoic acid for 14 days (RA). Subsequent to RA treatment, additional cultures underwent selection by incubation with a cocktail of mitotic inhibitors (MI) for 7 days. Equal amounts of protein were resolved by SDS-PAGE, and the levels of ApoE, Sp1, and Sp4 were assessed by western blot analysis. <b>B</b>. Differentiated NTera2 cells were untreated or treated with 20 &#956;M glutamate for 20 h, then levels of ApoE and actin were assessed by western blot.</p>
            </text>
            <graphic file="1742-2094-6-16-6"/>
         </fig>
         <p>Sp4 expression, already apparent in undifferentiated NTera2 cells <abbrgrp><abbr bid="B51">51</abbr></abbrgrp>, appears to increase slightly during the differentiation process (Figure <figr fid="F6">6A</figr>). It is possible that induction of Sp4 is an important event in readying neural stem cells for differentiation down the neuronal path. The functional implications of the Sp1:Sp4 ratio may not be limited to cell cycle regulation. Apolipoprotein E (ApoE) expression is normally limited to astrocytes and not neurons <abbrgrp><abbr bid="B76">76</abbr></abbrgrp>, and the ApoE promoter is responsive to Sp1 <abbrgrp><abbr bid="B77">77</abbr></abbrgrp>. We found that during differentiation of NTera2 cells [see Additional file <supplr sid="S1">1</supplr>], ApoE levels decreased proportionally with Sp1 while Sp4 remained abundant (Figure <figr fid="F6">6A</figr>). This is consistent with a prior demonstration that ApoE is squelched during differentiation of NTera2 cells <abbrgrp><abbr bid="B78">78</abbr></abbrgrp> and may indicate that Sp4 exerts a transcriptional repression at the Sp1 element in the ApoE promoter.</p>
         <p>Neuronal expression of ApoE can be induced by excitotoxic stress <abbrgrp><abbr bid="B79">79</abbr><abbr bid="B80">80</abbr></abbrgrp>, and we found that glutamate-mediated excitotoxic stress results in an increase in ApoE levels in differentiated NTera2 cells (Figure <figr fid="F6">6B</figr>; see also Ref. <abbrgrp><abbr bid="B81">81</abbr></abbrgrp>). The induction of neuronal ApoE expression by glutamate and other excitotoxic agents may involve release from the repressive influence of Sp4. The DNA-binding activity attributable to Sp3 and Sp4 is diminished by glutamate treatment <abbrgrp><abbr bid="B30">30</abbr><abbr bid="B31">31</abbr><abbr bid="B32">32</abbr><abbr bid="B51">51</abbr></abbrgrp>. This phenomenon occurs rapidly &#8211; within 30 min of treatment of CNS neurons destined to die 20&#8211;24 hours later <abbrgrp><abbr bid="B30">30</abbr><abbr bid="B51">51</abbr></abbrgrp>. We determined that this depletion is dependent on calcium influx through NMDA receptors and correlates with the appearance of smaller DNA-binding proteins. The levels of intact Sp3 and Sp4 also decrease with similar kinetics and pharmacology in western blot analysis <abbrgrp><abbr bid="B51">51</abbr></abbrgrp>. It was eventually determined that activation of the calcium-dependent protease calpain is responsible for the loss of these proteins (and their conversion to smaller intermediates that retain DNA-binding activity). Rapid loss of Sp-factors is also associated with delayed toxicity caused by oxidative stress <abbrgrp><abbr bid="B30">30</abbr></abbrgrp>, though this apparently occurs through a calpain-independent process because it does not generate the same proteolytic products as does glutamate (data not shown). It is not known whether the early loss of Sp3 and Sp4 contributes to the cell death occurring later; it is possible that there are compensatory benefits resulting from attenuation of the levels and activities of these transcription factors. The latter idea is given some support by the finding that neuronal Sp-factors have an inhibitory influence on transcription via a regulatory element in the <it>Sod2 </it>gene (below). Thus, their degradation under conditions of stress could be permissive for the elevation of a protective antioxidant enzyme.</p>
      </sec>
      <sec>
         <st>
            <p>Cell-type specificity of a &#954;B element: regulation of the <it>Sod2 </it>gene</p>
         </st>
         <p>To test the effects of Sp-factors on &#954;B-driven genes in neurons, we analyzed several &#954;B sequences predicted to bind Sp-factors <abbrgrp><abbr bid="B50">50</abbr></abbrgrp>. One of these lies in the gene for superoxide dismutase-2 (Mn-SOD), which has an intronic enhancer element previously shown to be regulated by NF&#954;B in nonneuronal cells lying within <ul>r</ul>at <it><ul>S</ul>od2 </it><ul>i</ul>ntron 2 (RSI) <abbrgrp><abbr bid="B82">82</abbr><abbr bid="B83">83</abbr></abbrgrp>. We confirmed that the RSI &#954;B element was bound by NF&#954;B using EMSA. In nuclear extracts from TNF&#945;-treated astrocytes, three major complexes were detected <abbrgrp><abbr bid="B50">50</abbr></abbrgrp>. Through supershift assays with an array of antibodies against Rel-factors and Sp-family proteins, the three complexes were identified as p50/p50, p65/p50, and Sp1 comigrating with Sp3. On the other hand, there was only one complex from neuronal nuclear extracts, and it was identified as Sp3 comigrating with Sp4 <abbrgrp><abbr bid="B50">50</abbr></abbrgrp>. These data indicated that the proteins capable of binding the <it>Sod2</it>-&#954;B site differed dramatically between astrocytes and neurons; notably, binding by NF&#954;B and Sp1 was absent in neurons.</p>
         <p>To test the functional consequences of distinct <it>Sod2</it>-&#954;B-binding proteins, a luciferase reporter plasmid was constructed containing 500 bp of the RSI. Again, no activation could be detected in neurons after glutamate treatment <abbrgrp><abbr bid="B50">50</abbr></abbrgrp>. Furthermore, Sp3 and Sp4 suppressed the promoter activity through the &#954;B site in neurons, because expression was elevated by either point mutation of the &#954;B site or depletion of available Sp-family proteins with decoy oligonucleotides. As predicted by the EMSA data, I&#954;B&#945; cotransfection had no effect in neurons. RelA cotransfection significantly enhanced the reporter activity, which could be completely blocked by I&#954;B&#945; coexpression. The activity of the intronic promoter was high in astrocytes (at least partially due to the fact that glia are activated by transfection itself) and was drastically inhibited by Sp1-decoy oligonucleotides or I&#954;B&#945;; activity was completely abolished by combination of the two <abbrgrp><abbr bid="B50">50</abbr></abbrgrp>. Together, these data showed that Sp-factors (Sp3 and Sp4) are the major neuronal &#954;B-binding factors and that they suppress transcriptional activity by interacting with the intronic &#954;B site in neurons. On the contrary, glial Sp-factors (Sp1 and Sp3) result in activation that can synergize with that produced by NF&#954;B through the same &#954;B site. A tandem &#954;B-element has been identified in the promoter for &#946;APP <abbrgrp><abbr bid="B84">84</abbr></abbrgrp>. Mutation of these two &#954;B sites in the &#946;APP promoter (3.8 kb) did not change its activity in neurons, further demonstrating that NF&#954;B is not involved in regulating &#954;B elements in neurons under basal conditions.</p>
      </sec>
      <sec>
         <st>
            <p>Significance for neuroinflammatory disease</p>
         </st>
         <p>Because of its importance for expression of cytokines and other factors related to inflammation, NF&#954;B has been targeted for inhibition by some therapeutic strategies. The actions of certain pharmacotherapeutic agents such as aspirin are thought to include inhibition of NF&#954;B, and this may be an effect of more recently developed drugs such as agonists of peroxisome proliferator-activated receptors (PPAR) <abbrgrp><abbr bid="B85">85</abbr><abbr bid="B86">86</abbr></abbrgrp>. Therapeutic objectives also inspired the development of specific IKK inhibitors, which has been a boon to research, as well. With the discovery of anti-apoptotic actions of NF&#954;B, some have supposed that its inhibition might be dangerous to CNS neurons <abbrgrp><abbr bid="B87">87</abbr></abbrgrp>. While our findings do not rule out a contribution of NF&#954;B to neuronal survival under every condition, they do suggest that control of inflammation by inhibition of NF&#954;B will not cause significant levels of neuronal cell death. Recently, it has been proposed that homo- or heterodimers of c-Rel are neuroprotective whereas p50/RelA is neurotoxic <abbrgrp><abbr bid="B88">88</abbr></abbrgrp>. However, c-Rel-containing species are activated via the canonical IKK2-dependent pathway and are thus just as sensitive to salicylates <abbrgrp><abbr bid="B89">89</abbr></abbrgrp> (and other IKK inhibitors). Salicylates and IKK inhibitors are associated with positive outcomes in a variety of neurotoxicological models <abbrgrp><abbr bid="B90">90</abbr><abbr bid="B91">91</abbr><abbr bid="B92">92</abbr><abbr bid="B93">93</abbr><abbr bid="B94">94</abbr></abbrgrp>, indicating that neurons probably do not depend upon tonic NF&#954;B activity.</p>
         <p>As a specific neuroinflammatory condition, Alzheimer's disease might hold relevance for the unique expression and regulation of transcription factors we have found in neurons. We recently conducted an analysis of &#946;APP expression in normal aging and Alzheimer's disease <abbrgrp><abbr bid="B81">81</abbr></abbrgrp>. These studies documented a glutamate-triggered induction of &#946;APP expression that is dependent upon the product of the &#949;3 allele of apolipoprotein E (ApoE3). (Possession of the major alternative allele in humans, ApoE4, is associated with a dramatically increased risk for Alzheimer's disease.) Moreover, our findings indicated that this glutamate&#8594;ApoE3&#8594;&#946;APP axis becomes uncoupled in the early stages of Alzheimer pathogenesis. ApoE levels continue to rise with advancing Alzheimer pathology, but <it>de novo </it>expression of &#946;APP in neuronal somata is dramatically depleted. To test the consequences of this loss of &#946;APP, we examined &#946;APP-knockout mice <abbrgrp><abbr bid="B95">95</abbr></abbrgrp>. Neurons in the brains of these mice showed elevated expression of cyclins D1 (Figure <figr fid="F7">7</figr>) and E1 (not shown), which have promoters that are responsive to Sp1. Such ectopic expression of cell cycle markers in post-mitotic neurons is a curious component of pathology found in Alzheimer's and other neurodegenerative conditions and one that appears to trigger apoptosis <abbrgrp><abbr bid="B96">96</abbr></abbrgrp>. It is possible that this phenomenon involves derangement of the Sp4:Sp1 ratio in stressed neurons.</p>
         <fig id="F7">
            <title>
               <p>Figure 7</p>
            </title>
            <caption>
               <p>Induction of neuronal expression of cyclin D1 in &#946;APP-deficient mice</p>
            </caption>
            <text>
               <p><b>Induction of neuronal expression of cyclin D1 in &#946;APP-deficient mice</b>. Brain sections from wild-type ("WT") and &#946;APP-knockout ("APP-KO") mice were subjected to immunofluorescence detection of cyclin D1 (green). The sections were counterstained with DAPI to visualize nuclei (blue). Representative images are shown. The pixel intensity of specific staining was randomly sampled in the CA1 and dentate cell body layer. The mean values and standard errors are shown in graphically. Statistical comparison between the two genotypes by t-test indicated <it>p </it>&lt; 0.05 (n = 4) in each hippocampal region.</p>
            </text>
            <graphic file="1742-2094-6-16-7"/>
         </fig>
         <p>In light of the information produced by our analysis of Sp1-related factors, we propose a model with implications for neurodegeneration such as that occurring in Alzheimer's (Figure <figr fid="F8">8</figr>). The ApoE gene has an Sp-factor binding site in its promoter that permits induction by Sp1 in nonneuronal cells <abbrgrp><abbr bid="B77">77</abbr></abbrgrp>, but ApoE is suppressed in neurons <abbrgrp><abbr bid="B97">97</abbr></abbrgrp>. We propose that this is a result of the Sp1&#8594;Sp4 switch during neuronal differentiation. Moreover, we propose that the induction of ApoE by glutamate we have observed <abbrgrp><abbr bid="B81">81</abbr></abbrgrp> results from a calpain-mediated degradation of Sp4, thus liberating ApoE from an Sp4-mediated suppression. Finally, we propose that dysregulation of normal aspects of neuronal differentiation in Alzheimer's, perhaps brought about by loss of Sp4, leads to ectopic expression of cell cycle proteins and neuronal cell death.</p>
         <fig id="F8">
            <title>
               <p>Figure 8</p>
            </title>
            <caption>
               <p>Schematic for the roles of Sp1 and Sp4 in neuronal differentiation and degeneration</p>
            </caption>
            <text>
               <p><b>Schematic for the roles of Sp1 and Sp4 in neuronal differentiation and degeneration</b>. Immature neuroblasts appear to similar levels of Sp1 and Sp4, perhaps competing for regulatory control of genes not strongly related to differentiated neuronal function. After differentiation, mature neurons have much lower levels of Sp1; Sp4 competitively inhibits DNA binding and exerts transcriptional repression on genes related to mitosis and other genes inappropriate for neurons, such as ApoE. Upon excessive stimulation of glutamate receptors, a large calcium influx activates calpain, which digests Sp4. This may relieve the transcriptional repression of mitotic genes, permitting their inappropriate expression in terminally differentiated neurons; the latter appears sufficient to trigger apoptosis.</p>
            </text>
            <graphic file="1742-2094-6-16-8"/>
         </fig>
      </sec>
      <sec>
         <st>
            <p>Competing interests</p>
         </st>
         <p>The authors declare that they have no competing interests.</p>
      </sec>
      <sec>
         <st>
            <p>Authors' contributions</p>
         </st>
         <p>XM generated most of the data and wrote the first draft of the text. AMM-H generated data on expression of Sp1, Sp4, and ApoE during differentiation of NTera2 cells and contributed substantially to the text. YC generated data on the expression of cyclin D1 in APP-knockout mice. SWB conceived of most of the studies and contributed substantially to the text.</p>
      </sec>
   </bdy>
   <bm>
      <ack>
         <sec>
            <st>
               <p>Acknowledgements</p>
            </st>
            <p>This work was supported by funds from the NIH (R01NS046439 and P01AG12411). The &#954;B-&#946;gal transgenic mice were a gift from Philip A. Barker (McGill Univ., Montreal). &#946;APP-knockout and corresponding wild-type mice were gifts from Hui Zheng (Baylor College of Medicine, Houston).</p>
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